../../tmp/servers/virsirnadb/836982621
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2040 | 1 | taccaacacatgctgaccc | 19 | |
| L24917.1 | HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS | 5265 | ................... | 5283 | 100 |
| L24917.1 | HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS | 809 | __.........c..t.a._ | 794 | 68 |
| L24917.1 | HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS | 3623 | ...at........._____ | 3636 | 63 |
| L24917.1 | HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS | 1817 | _______..........__ | 1808 | 52 |
| FJ445129.1 | Human rhinovirus 40 strain ATCC VR-341, complete genome | 5270 | ................... | 5288 | 100 |
| FJ445135.1 | Human rhinovirus 50 strain ATCC VR-517, complete genome | 5250 | ................... | 5268 | 100 |
| NC_009996.1 | Human rhinovirus C, complete genome | 5228 | ................a.. | 5246 | 94 |
| DQ473498.1 | Human rhinovirus 10, complete genome | 5269 | .............a..... | 5287 | 94 |
| DQ473498.1 | Human rhinovirus 10, complete genome | 2258 | _______..........a. | 2247 | 57 |
| DQ473500.1 | Human rhinovirus 59, complete genome | 5266 | .............c..... | 5284 | 94 |
| DQ473500.1 | Human rhinovirus 59, complete genome | 3624 | ...at........._____ | 3637 | 63 |
| DQ473509.1 | Human rhinovirus A, complete genome | 5266 | ................t.. | 5284 | 94 |
| DQ473509.1 | Human rhinovirus A, complete genome | 5211 | ..a........._______ | 5200 | 57 |
| EF173417.1 | Human rhinovirus 64, complete genome | 5263 | ....c.............. | 5281 | 94 |
| FJ445118.1 | Human rhinovirus 18 strain ATCC VR-1128, complete genome | 5251 | ................t.. | 5269 | 94 |
| FJ445122.1 | Human rhinovirus 22 strain ATCC VR-1132, complete genome | 5263 | ................t.. | 5281 | 94 |
| FJ445125.1 | Human rhinovirus 29 strain ATCC VR-1139, complete genome | 5255 | .............a..... | 5273 | 94 |
| FJ445131.1 | Human rhinovirus 43 strain ATCC VR-1153, complete genome | 5268 | ....t.............. | 5286 | 94 |
| FJ445143.1 | Human rhinovirus 60 strain ATCC VR-1473, complete genome | 5271 | .............a..... | 5289 | 94 |
| FJ445145.1 | Human rhinovirus 62 strain ATCC VR-1172, complete genome | 5263 | .............a..... | 5281 | 94 |
| FJ445146.1 | Human rhinovirus 63 strain ATCC VR-1173, complete genome | 5273 | .............a..... | 5291 | 94 |
| FJ445148.1 | Human rhinovirus 66 strain ATCC VR-1176, complete genome | 5271 | ................t.. | 5289 | 94 |
| FJ445154.1 | Human rhinovirus 77 strain ATCC VR-1187, complete genome | 5268 | .............a..... | 5286 | 94 |
| FJ445157.1 | Human rhinovirus 81 strain ATCC VR-1191, complete genome | 5257 | ................t.. | 5275 | 94 |
| FJ445157.1 | Human rhinovirus 81 strain ATCC VR-1191, complete genome | 4751 | ___..........a..a._ | 4765 | 68 |
| FJ445157.1 | Human rhinovirus 81 strain ATCC VR-1191, complete genome | 3615 | ...at........._____ | 3628 | 63 |
| FJ445158.1 | Human rhinovirus 81 isolate F06, complete genome | 5257 | ................t.. | 5275 | 94 |
| FJ445158.1 | Human rhinovirus 81 isolate F06, complete genome | 3615 | ...at........._____ | 3628 | 63 |
| FJ445159.1 | Human rhinovirus 81 isolate F07, complete genome | 5257 | ................t.. | 5275 | 94 |
| FJ445159.1 | Human rhinovirus 81 isolate F07, complete genome | 3615 | ...at........._____ | 3628 | 63 |
| FJ445163.1 | Human rhinovirus 85 strain ATCC VR-1195, complete genome | 5272 | ................t.. | 5290 | 94 |
| FJ445173.1 | Human rhinovirus 98 strain ATCC VR-1298, complete genome | 5265 | .............a..... | 5283 | 94 |
| FJ445178.1 | Human rhinovirus 10 strain ATCC VR-1120, complete genome | 5269 | .............a..... | 5287 | 94 |
| FJ445178.1 | Human rhinovirus 10 strain ATCC VR-1120, complete genome | 2258 | _______..........a. | 2247 | 57 |
| FJ445181.1 | Human rhinovirus 64 strain ATCC VR-1174, complete genome | 5263 | ....c.............. | 5281 | 94 |
| DQ473506.1 | Human rhinovirus 46, complete genome | 5288 | ................___ | 5303 | 84 |
| DQ473506.1 | Human rhinovirus 46, complete genome | 975 | _..........c.a..___ | 989 | 68 |
| FJ445120.1 | Human rhinovirus 20 strain ATCC VR-1130, complete genome | 5303 | ................___ | 5318 | 84 |
| X02316.1 | Human rhinovirus 2, complete sequence | 5241 | .............a..t.. | 5259 | 89 |
| D00239.1 | HRVACG Human rhinovirus 1B, complete genome | 5274 | .t..............t.. | 5292 | 89 |
| M16248.1 | HRV89 Human rhinovirus type 89 (HRV89), complete genome | 5291 | .t.........t....... | 5309 | 89 |
| DQ473491.1 | Human rhinovirus 41, complete genome | 5279 | .c.....t........... | 5297 | 89 |
| DQ473491.1 | Human rhinovirus 41, complete genome | 3637 | ...at........._____ | 3650 | 63 |
| DQ473492.1 | Human rhinovirus 73, complete genome | 5276 | ....c...........t.. | 5294 | 89 |
| DQ473495.1 | Human rhinovirus 38, complete genome | 5268 | .............a..t.. | 5286 | 89 |
| DQ473496.1 | Human rhinovirus 49, complete genome | 5243 | .............a..t.. | 5261 | 89 |
| DQ473499.1 | Human rhinovirus 44, complete genome | 5255 | .............a..t.. | 5273 | 89 |
| DQ473499.1 | Human rhinovirus 44, complete genome | 6935 | ____.........._____ | 6926 | 52 |
| DQ473501.1 | Human rhinovirus 34, complete genome | 5251 | .g...........a..... | 5269 | 89 |
| DQ473502.1 | Human rhinovirus 76, complete genome | 5265 | .............a..t.. | 5283 | 89 |
| DQ473502.1 | Human rhinovirus 76, complete genome | 3623 | ...at........._____ | 3636 | 63 |
| DQ473512.1 | Human rhinovirus 30, complete genome | 5236 | ..........c.....t.. | 5254 | 89 |
| EF173416.1 | Human rhinovirus 24, complete genome | 5264 | .c.....t........... | 5282 | 89 |
| FJ445111.1 | Human rhinovirus 1 strain ATCC VR-1559, complete genome | 5278 | .c..............t.. | 5296 | 89 |
| FJ445111.1 | Human rhinovirus 1 strain ATCC VR-1559, complete genome | 989 | _.........ac....___ | 1003 | 68 |
| FJ445114.1 | Human rhinovirus 9 isolate F01, complete genome | 5268 | .c..............t.. | 5286 | 89 |
| FJ445114.1 | Human rhinovirus 9 isolate F01, complete genome | 3631 | _____..........____ | 3640 | 52 |
| FJ445115.1 | Human rhinovirus 9 isolate F02, complete genome | 5267 | .c..............t.. | 5285 | 89 |
| FJ445117.1 | Human rhinovirus 13 isolate F03, complete genome | 5277 | ....c...........t.. | 5295 | 89 |
| FJ445117.1 | Human rhinovirus 13 isolate F03, complete genome | 3635 | ...at........._____ | 3648 | 63 |
| FJ445123.1 | Human rhinovirus 25 strain ATCC VR-1135, complete genome | 5258 | .............a..t.. | 5276 | 89 |
| FJ445126.1 | Human rhinovirus 31 strain ATCC VR-506, complete genome | 5263 | .............a..t.. | 5281 | 89 |
| FJ445127.1 | Human rhinovirus 32 strain ATCC VR-1142, complete genome | 5265 | .t..............t.. | 5283 | 89 |
| FJ445128.1 | Human rhinovirus 33 strain ATCC VR-330, complete genome | 5265 | .t...........a..... | 5283 | 89 |
| FJ445128.1 | Human rhinovirus 33 strain ATCC VR-330, complete genome | 3623 | ...at........._____ | 3636 | 63 |
| FJ445140.1 | Human rhinovirus 56 strain ATCC VR-1166, complete genome | 5268 | .............a..t.. | 5286 | 89 |
| FJ445140.1 | Human rhinovirus 56 strain ATCC VR-1166, complete genome | 3104 | _____.........c..__ | 3115 | 57 |
| FJ445141.1 | Human rhinovirus 57 isolate fs ship#1-hrv-57, complete genome | 5266 | .t...........a..... | 5284 | 89 |
| FJ445142.1 | Human rhinovirus 58 strain ATCC VR-1168, complete genome | 5279 | .t.........t....... | 5297 | 89 |
| FJ445142.1 | Human rhinovirus 58 strain ATCC VR-1168, complete genome | 6959 | ____.........._____ | 6950 | 52 |
| FJ445144.1 | Human rhinovirus 61 strain ATCC VR-1171, complete genome | 5279 | ....c..c........... | 5297 | 89 |
| FJ445149.1 | Human rhinovirus 67 strain ATCC VR-1177, complete genome | 5266 | ....t...........t.. | 5284 | 89 |
| FJ445160.1 | Human rhinovirus 82 strain ATCC VR-1192, complete genome | 5260 | .............c..t.. | 5278 | 89 |
| FJ445167.1 | Human rhinovirus 90 strain ATCC VR-1291, complete genome | 5256 | .c..............t.. | 5274 | 89 |
| FJ445167.1 | Human rhinovirus 90 strain ATCC VR-1291, complete genome | 3614 | ...at........._____ | 3627 | 63 |
| FJ445167.1 | Human rhinovirus 90 strain ATCC VR-1291, complete genome | 5201 | ..a........._______ | 5190 | 57 |
| FJ445177.1 | Human rhinovirus 9 strain ATCC VR-489, complete genome | 5266 | .t..............t.. | 5284 | 89 |
| FJ445177.1 | Human rhinovirus 9 strain ATCC VR-489, complete genome | 3624 | ...at..........____ | 3638 | 68 |
| FJ445179.1 | Human rhinovirus 30 strain ATCC VR-1140, complete genome | 5230 | ..........c.....t.. | 5248 | 89 |
| FJ445180.1 | Human rhinovirus 38 strain ATCC VR-1148, complete genome | 5268 | .............a..t.. | 5286 | 89 |
| FJ445182.1 | Human rhinovirus 76 strain ATCC VR-1186, complete genome | 5264 | .............a..t.. | 5282 | 89 |
| FJ445182.1 | Human rhinovirus 76 strain ATCC VR-1186, complete genome | 3622 | ...at........._____ | 3635 | 63 |
| FJ445184.1 | Human rhinovirus 89 strain ATCC VR-1199, complete genome | 5291 | .t.........t....... | 5309 | 89 |
| FJ445189.1 | Human rhinovirus 34 strain ATCC VR-1144, complete genome | 5251 | .g...........a..... | 5269 | 89 |
| FJ445190.1 | Human rhinovirus 24 strain ATCC VR-1134, complete genome | 5264 | .c.....t........... | 5282 | 89 |
| NC_001617.1 | Human rhinovirus 89, complete genome | 5291 | .t.........t....... | 5309 | 89 |
| DQ473507.1 | Human rhinovirus 53, complete genome | 5282 | ..........c.....___ | 5297 | 78 |
| DQ473507.1 | Human rhinovirus 53, complete genome | 3794 | _________.......... | 3803 | 52 |
| DQ473508.1 | Human rhinovirus 28, complete genome | 5288 | .t..............___ | 5303 | 78 |
| DQ473508.1 | Human rhinovirus 28, complete genome | 984 | _.........cc.....a. | 1001 | 78 |
| DQ473508.1 | Human rhinovirus 28, complete genome | 5941 | ___...a..........__ | 5954 | 68 |
| DQ473508.1 | Human rhinovirus 28, complete genome | 3800 | _________.......... | 3809 | 52 |
| FJ445150.1 | Human rhinovirus 68 strain ATCC VR-1178, complete genome | 5304 | .t..............___ | 5319 | 78 |
| FJ445150.1 | Human rhinovirus 68 strain ATCC VR-1178, complete genome | 2179 | ___..t.........____ | 2190 | 57 |
| EF582387.1 | Human rhinovirus C strain 026, complete genome | 5218 | ....c.........c.g.. | 5236 | 84 |
| DQ473485.1 | Human rhinovirus 3, complete genome | 5344 | .............cc.a.. | 5362 | 84 |
| DQ473485.1 | Human rhinovirus 3, complete genome | 5995 | ____..a.........___ | 6006 | 57 |
| EF173422.1 | Human rhinovirus 3, complete genome | 5344 | .............cc.a.. | 5362 | 84 |
| EF173422.1 | Human rhinovirus 3, complete genome | 5995 | ____..a.........___ | 6006 | 57 |
| AY751783.1 | Human rhinovirus 39, complete genome | 5266 | .c..t...........t.. | 5284 | 84 |
| AY751783.1 | Human rhinovirus 39, complete genome | 977 | _.........gc.....a. | 994 | 78 |
| AY751783.1 | Human rhinovirus 39, complete genome | 3624 | ...at........._____ | 3637 | 63 |
| DQ473505.1 | Human rhinovirus 36, complete genome | 5280 | .t.........t....t.. | 5298 | 84 |
| DQ473505.1 | Human rhinovirus 36, complete genome | 3119 | .........._________ | 3128 | 52 |
| DQ473510.1 | Human rhinovirus 75, complete genome | 5272 | .g..c...........t.. | 5290 | 84 |
| DQ473511.1 | Human rhinovirus 55, complete genome | 5168 | .t...........a..t.. | 5186 | 84 |
| DQ473511.1 | Human rhinovirus 55, complete genome | 5113 | ..a........._______ | 5102 | 57 |
| EF173419.1 | Human rhinovirus 94, complete genome | 5264 | .g..t..t........... | 5282 | 84 |
| FJ445132.1 | Human rhinovirus 45 strain ATCC VR-1155, complete genome | 5252 | .c..c...........t.. | 5270 | 84 |
| FJ445132.1 | Human rhinovirus 45 strain ATCC VR-1155, complete genome | 4547 | _.t...a.........___ | 4533 | 68 |
| FJ445133.1 | Human rhinovirus 47 strain ATCC VR-1157, complete genome | 5264 | .g...........a..t.. | 5282 | 84 |
| FJ445185.1 | Human rhinovirus 94 strain ATCC VR-1295, complete genome | 5264 | .g..t..t........... | 5282 | 84 |
| EF582386.1 | Human rhinovirus C strain 025, complete genome | 5253 | .t...........a..___ | 5268 | 73 |
| DQ473487.1 | Human rhinovirus 35, complete genome | 5352 | .t..c.........c.a.. | 5370 | 78 |
| DQ473487.1 | Human rhinovirus 35, complete genome | 2565 | _____..........____ | 2556 | 52 |
| FJ445124.1 | Human rhinovirus 26 strain ATCC VR-1136, complete genome | 5344 | .t...........ac.a.. | 5362 | 78 |
| FJ445124.1 | Human rhinovirus 26 strain ATCC VR-1136, complete genome | 2558 | ____...........____ | 2548 | 57 |
| FJ445161.1 | Human rhinovirus 83 strain ATCC VR-1193, complete genome | 5359 | .g..c.........c.a.. | 5377 | 78 |
| FJ445169.1 | Human rhinovirus 92 strain ATCC VR-1293, complete genome | 5360 | .t..t.........c.a.. | 5378 | 78 |
| FJ445169.1 | Human rhinovirus 92 strain ATCC VR-1293, complete genome | 2570 | _____..........____ | 2561 | 52 |
| DQ473494.1 | Human rhinovirus 74, complete genome | 5259 | ..........ct.a..t.. | 5277 | 78 |
| DQ473494.1 | Human rhinovirus 74, complete genome | 5891 | _.a..........______ | 5902 | 57 |
| DQ473504.1 | Human rhinovirus 88, complete genome | 5282 | .c.........t.a..t.. | 5300 | 78 |
| FJ445136.1 | Human rhinovirus 51 strain ATCC VR-1161, complete genome | 6970 | ___..........._____ | 6960 | 57 |
| FJ445136.1 | Human rhinovirus 51 strain ATCC VR-1161, complete genome | 3110 | .........._________ | 3119 | 52 |
| GU219984.1 | Human rhinovirus C strain HRV-C15 isolate W10, complete genome | 7007 | .........t..ta..t._ | 6990 | 73 |
| FJ445147.1 | Human rhinovirus 65 strain ATCC VR-1175, complete genome | 7020 | .........t.tg..g.._ | 7037 | 73 |
| FJ445147.1 | Human rhinovirus 65 strain ATCC VR-1175, complete genome | 3120 | .........._________ | 3129 | 52 |
| EF186077.1 | Human rhinovirus QPM polyprotein gene, complete cds | 2174 | .........c.c.._____ | 2161 | 63 |
| FJ445134.1 | Human rhinovirus 49 isolate F04, complete genome | 3604 | ...at........._____ | 3617 | 63 |
| EU840952.2 | Human rhinovirus C strain CL-170085, complete genome | 6109 | ___.........a..____ | 6120 | 57 |
| FJ445119.1 | Human rhinovirus 19 strain ATCC VR-1129, complete genome | 4764 | ____.........c..___ | 4775 | 57 |
| EF173425.1 | Human rhinovirus 93, complete genome | 5346 | .........._________ | 5355 | 52 |
| FJ445130.1 | Human rhinovirus 42 strain ATCC VR-338, complete genome | 2557 | _____..........____ | 2548 | 52 |
| FJ445164.1 | Human rhinovirus 86 strain ATCC VR-1196, complete genome | 2562 | _____..........____ | 2553 | 52 |
| FJ445172.1 | Human rhinovirus 97 strain ATCC VR-1297, complete genome | 2553 | _____..........____ | 2544 | 52 |
| FJ445187.1 | Human rhinovirus 35 strain ATCC VR-1145, complete genome | 2565 | _____..........____ | 2556 | 52 |
| DQ473503.1 | Human rhinovirus 7, complete genome | 6965 | ____.........._____ | 6956 | 52 |
| FJ445152.1 | Human rhinovirus 71 strain ATCC VR-1181, complete genome | 6978 | ____.........._____ | 6969 | 52 |
| FJ445165.1 | Human rhinovirus 89 isolate F09, complete genome | 3119 | .........._________ | 3128 | 52 |
| FJ445166.1 | Human rhinovirus 89 isolate F08, complete genome | 3121 | .........._________ | 3130 | 52 |
| FJ445176.1 | Human rhinovirus 7 strain ATCC VR-1117, complete genome | 6965 | ____.........._____ | 6956 | 52 |